Comparación de cuatro métodos para contar peces en una bahía tropical: el caso del Área Marina de Manejo Bahía Santa Elena en el Pacífico de Costa Rica / Comparison of four methods to count fish in a tropical bay: the case of the Santa Elena Bay Marine Management Area in the Pacific of Costa Rica

Resumen Introducción: La naturaleza tropical está experimentando una amenaza sin precedentes que incluye comunidades de peces costeros que requieren un constante seguimiento de la presencia de especies. El uso simultáneo de varios métodos de monitoreo debería reducir el sesgo causado por la selectividad de cada método. Objetivo: Este estudio uso cuatro diferentes métodos de muestreo a lo largo de dos años para evaluar y comparar los ensamblajes de peces en el Área Marina de Manejo Bahía Santa Elena, Pacífico de Costa Rica. Métodos: Examinamos los cambios en la riqueza y composición de especies entre épocas de afloramiento y no afloramiento entre julio de 2019 y febrero de 2020. Aplicamos censos visuales, cámaras remotas submarinas; líneas de fondo; y pesca deportiva. Resultados: Identificamos 140 especies de peces (54 familias); las cámaras submarinas remotas detectaron el 83 %, seguido por los censos visuales submarinos (65 %), la pesca deportiva (16 %) y las líneas de fondo (14 %). Solo el método de pesca deportiva detectó diferencias en la riqueza y composición de especies entre temporadas. Conclusión: Las cámaras remotas parecen ser el mejor método para el conteo de especies y la pesca deportiva para detectar diferencias estacionales en las costas tropicales similares a la aquí estudiada.

Abstract Introduction: Tropical nature is experiencing an unprecedented threat that includes coastal fish communities that requires a close monitoring of species presence. The simultaneous use of several monitoring methods should reduce the bias caused by the selectivity of each method. Objective: This study used four different sampling methods over two years to assess and compare fish assemblages in the Santa Elena Bay Marine Management Area (AMM-BSE), North Pacific of Costa Rica. Methods: We examined changes in species richness and composition between upwelling and non-upwelling seasons from July 2019 and February 2020. We applied visual censuses, underwater remote cameras; bottom lines; and sport fishing. Results: We identified 140 species of fish (54 families); remote underwater cameras detected 83 %, followed by underwater visual censuses (65 %), sport-fishing (16 %) and bottom lines (14 %). Only the sport-fishing method detected differences in species richness and composition between seasons. Conclusion: Remote cameras appear to be the best method for species counts, and sport-fishing to detect seasonal differences in tropical coasts similar to the one studied here.

Spatio-temporal sublittoral macrobenthic distribution and dominant species in Guanabara Bay, Rio de Janeiro, Brazil / Distribuição espaço-temporal do macrobentos de infralitoral e espécies dominantes na Baía de Guanabara, Rio de Janeiro, Brasil

Abstract Soft-bottom macrobenthic invertebrates are sensitive to natural or anthropogenic changes in aquatic ecosystems. The distribution patterns of sublittoral macrobenthic species in Guanabara Bay were studied from 2005 to 2007. Samples were collected at ten stations during six surveys throughout the rainfall regime (dry, early and late rainy). Ten replicates were collected at each station by Gravity corer or skin diving. Van Dorn bottles (bottom water) and by Ekman sediment sampler (granulometry) provided material for abiotic data. Stations were grouped into sectors (Entrance, Intermediary and Inner) based on abiotic data and location. The Redundancy Analysis (RDA) and Parsimonious RDA for all years and each annual cycle showed indicator taxa with high dominance in each sector. PERMANOVA indicated a regular seasonality between the surveys for the first annual cycle (p <0.05), and an atypical pattern for the second (p> 0.05), possibly due the low rainfall observed during this period. The mosaic of soft-bottom substrates infers structural variables, and patterns of temporal distribution were basically influenced by parameters those indicating pollution and the SACW (South Atlantic Central Water) intrusion, as well as ecological attributes among species, such as: predation, competition. The Ervilia concentrica and Cypridinidae could be used as indicators for anthropic and natural impacts in the Guanabara Bay for the Entrance sector, while Cyprideis salebrosa and Cyprideis sp. for the Intermediary sector and Heleobia australis for the Inner sector.

Resumo Os invertebrados macrobentônicos são sensíveis as alterações naturais e antrópicas nos ecossistemas aquáticos. O padrão de distribuição das espécies macrobentônicas do infralitoral da Baía de Guanabara foram estudados de 2005 até 2007. Amostras foram coletadas em dez estações durante seis campanhas em todo o regime pluviométrico (seco, pré e pós chuvoso). Dez réplicas foram coletadas em cada estação por meio do amostrador Gravity corer ou por mergulho livre. Os dados abióticos foram coletados por meio de garrafa oceanográfica do tipo van Dorn (água de fundo) e por busca fundo do tipo Ekman (granulometria). As estações foram agrupadas em setores (Entrada, Intermediária e Interna) baseada nos dados abióticos e localização. A Análise de Redundância (RDA) e RDA Parcimoniosa para todos os anos e em cada ano evidenciou taxa indicadores como elevada dominância em cada setor. A PERMANOVA indicou sazonalidade regular entre as campanhas para o primeiro ciclo anual (p<0.05), padrão atípico para o segundo ano (p> 0.05), possivelmente por causa da baixa pluviosidade observada durante esse período. O mosaico do substrato não consolidado infere que as variáveis estruturais, e os padrões de distribuição temporal foram basicamente influenciadas por parâmetros que indicam poluição e intrusão de ACAS (Água Central do Atlântico Sul), bem como atributos ecológicos entre espécies, tais como: predação, competição, entre outros. Ervilia concentrica e Cypridinidae podem ser utilizados como indicadores de alterações naturais e antrópicos no setor da Entrada da Baía de Guanabara, enquanto Cyprideis salebrosa e Cyprideis sp. para o setor Intermediário e Heleobia australis para o setor Interno.

Community ecology of the metazoan parasites of the Atlantic thread herring, Opisthonema oglinum (Lesueur, 1818) (Actinopterygii: Clupeidae) from the Sepetiba Bay, Rio de Janeiro, Brazil / Ecologia da comunidade dos metazoários parasitos da sardinha bandeira Opisthonema oglinum (Lesueur, 1818) (Actinopterygii: Clupeidae) da Baía de Sepetiba, Rio de Janeiro, Brasil

This study aimed to evaluate the parasitic fauna of Opisthonema oglinum (Lesueur, 1818) from Southeastern Brazil. Between September 2017 and March 2018, a total of 100 specimens of O. oglinum from the Sepetiba Bay, Rio de Janeiro, Brazil (22°54'S, 43°34'W) were examined. Ninety one specimens of O. oglinum were parasitized by at least one species of metazoan with a mean of 5.84 ± 7.98 parasites/fish. Seven species were collected: 2 digeneans, 2 monogeneans, 2 copepods and 1 nematode. The digenean Parahemiurus merus (Linton) was the most abundant and dominant species, representing 43% of metazoan parasites collected. The parasite species richness was positively correlated with the total length of the hosts. Only Neobomolochus elongatus Cressey showed a positive correlation between host's total length and parasite prevalence. The mean parasite species diversity was not correlated with host's total length, but significant differences among the mean parasite diversity between males and females was observed. Opisthonema oglinum represents a new host record for Caligus mutabilis Wilson, Hysterothylacium sp. and Cribomazocraes travassosi Santos and Kohn. The copepod N. elongatus is recorded for the first time on the Brazilian coast.

Este estudo teve como objetivo avaliar a fauna parasitária de Opisthonema oglinum (Lesueur, 1818) do Sudeste do Brasil. No período entre setembro de 2017 e março de 2018, um total de 100 espécimes de O. oglinum provenientes da Baía de Sepetiba, Rio de Janeiro, Brasil (22°54'S; 43°34'O), foram examinados. Noventa espécimes de O. oglinum estavam parasitados por pelo menos uma espécie de metazoário com média de 5,84 ± 7,98 parasitos/peixe. Sete espécies foram coletadas: 2 digenéticos, 2 monogenéticos, 2 copépodes e 1 nematoide. O digenético Parahemiurus merus (Linton) foi à espécie mais abundante e dominante, representando 43% dos metazoários parasitos coletados. A riqueza parasitária foi correlacionada com o comprimento total do hospedeiro. Apenas Neobomolochus elongatus Cressey apresentou correlação positiva entre o comprimento total do hospedeiro e a prevalência parasitária. A diversidade média de espécies de parasitos não apresentou correlação com o comprimento total do hospedeiro, mas foram observadas diferenças significativas entre a diversidade média de parasitos entre machos e fêmeas. Opisthonema oglinum representa um novo registro de hospedeiro para Caligus mutabilis Wilson, Hysterothylacium sp. e Cribomazocraes travassosi Santos and Kohn. O copépode N. elongatus é registrado pela primeira vez na costa Brasileira.

Anatomy of soft body of Pugilina cochlidium (Linnaeus, 1758) and P. erecta (Vermeij & Raben, 2009) (Neogastropoda: Melongenidae) from Thondi Coast-Palk Bay in Tamil Nadu, India / Anatomia do corpo mole de Pugilina cochlidium (Linnaeus, 1758) e P. erecta (Vermeij & Raben, 2009) (Neogastropoda: Melongenidae) de Thondi Coast-Palk Bay em Tamil Nadu, na Índia

The species of Pugilina cochlidium (Linnaeus, 1758) and P. erecta (Vermeij & Raben, 2009) has been studied in the present study. The female can be differentiated from the male by the absence of the cephalic penis and a complicated genital aparatus visible through the mantle skirt in both the sexes. In other aspects of the external features of female are quite to males. In both species the digestive system was similar with few differences in structure between each other. It consists of buccal mass, proboscis, salivary glands, accessory salivary glands, oesophagus, stomach, intestine, rectum and anus. The nervous system in both P. cochlidium and P. erecta is constituted by six ganglia which forms the circumoesophgeal ganglionic ring. Among the neogastropods there is a similarity in the organization of the reproductive systems. The female reproductive system is more complicated than that of male. The sexes are separated in these two species. The gross morphology of the reproductive system of P. cochlidium and P. erecta was almost similar. The present study aims to describe the digestive system, nervous system and reproductive system of two gastropods species P. cochlidium and P. erecta.

As espécies de Pugilina cochlidium (Linnaeus, 1758) e P. erecta (Vermeij & Raben, 2009) foram tomadas no presente estudo. A fêmea pode ser diferenciada do macho pela ausência do pênis cefálico e um complicado complexo genital visível através da saia do manto em ambos os sexos. Em outros aspectos das características externas da fêmea são bastante semelhantes aos dos machos. Em ambas as espécies, o sistema digestivo era semelhante, com poucas diferenças de estrutura entre si. Consiste em massa bucal, probóscide, glândulas salivares, glândulas salivares acessórias, esôfago, estômago, intestino, reto e ânus. O sistema nervoso em P. cochlidium e P. erecta é constituído por seis gânglios que formam um anel ganglionar circunoesofágico. Entre os neogastrópodes, há uma semelhança na organização dos sistemas reprodutivos. O sistema reprodutivo feminino é mais complicado que o masculino. Os sexos são separados nessas duas espécies. A morfologia macroscópica do sistema reprodutivo de P. cochlidium e P. erecta foi quase similar. O presente estudo tem como objetivo descrever o sistema digestivo, sistema nervoso e sistema reprodutivo de duas espécies, P. cochlidium e P. erecta.

Danger beyond the catches: a review of conservation threats posed by commercial and non-commercial fisheries in Guaratuba Bay, southern Brazil / Perigo além das capturas: uma revisão das ameaças à conservação pelas pescas comercial e recreativa na Baía de Guaratuba, sul do Brasil

Comparisons between the implications of commercial and recreational fisheries for estuarine conservation have been a topic of debate. A review on the available data from Guaratuba Bay, Southern Brazil, identifies six threats for conservation, other than those concerning the fishing effort on target resources. Differing from the popular view that fishing for pleasure could be innocuous for the environment, the identified threats concern both commercial and non-commercial fisheries: (1) catching of reproductive individuals; (2) catch of big old fat fecund females; (3) loss and abandonment of fishing gears; (4) use of natural baits; (5) bycatch of rays, turtles and non-target finfish; and (6) bad practices associated with catch-and-release or discarding. Environmental disturbances and fauna depletion are detected as potential impacts. Recommended actions for estuary conservation include fishing closures in mangrove and shallow waters areas, release of fish larger than the critical size, and measures against abandoned, lost or otherwise discarded fishing gears.

As implicações das pescas comercial e recreativa para conservação dos estuários têm sido largamente discutidas. Uma revisão das informações disponíveis para a Baía de Guaratuba, sul do Brasil, identifica seis ameaças à conservação, que extrapolam aquelas concernentes ao esforço de captura sobre as espécies-alvo. Contrariando a visão comum de que a pesca de lazer seria inócua para o ambiente, as ameaças identificadas referem-se tanto à pesca comercial como à não-comercial: (1) captura de indivíduos em atividade reprodutiva; (2) captura de fêmeas grandes e mais fecundas; (3) perda e abandono de materiais de pesca; (4) uso de iscas naturais; (5) captura incidental de raias, tartarugas e peixes não-alvo; e (6) práticas inadequadas associadas a pesque-e-solte e descarte. Impactos potenciais são perturbações ambientais e depleção de fauna. Ações recomendadas para conservação do estuário incluem interdição de pesca no manguezal e áreas rasas, soltura de peixes com tamanho superior ao crítico, e medidas contra abandono, perda e outras formas de descarte de materiais de pesca.

Radular morphology by using SEM in Pugilina cochlidium (Gastropoda: Melongenidae) populations, from Thondi coast-Palk Bay in Tamil Nadu-South East coast of India / Morfologia radular usando populações SEM em Pugilina cochlidium (Gastropoda: Melongenidae), da costa de Thondi-Palk Bay em Tamil Nadu-costa sudeste da Índia

Abstract Radula in all melongeninae species is rather uniform and characterized by bicuspid lateral teeth with strongly curved cusps and sub rectangular rachidians, bearing usually 3 cusps. The aim of the present study was to describe the radula of 2 Pugilina cochlidium populations using SEM. The radula in 2 species proves itself as a rachiglossate type showing the radular formula of 1 + R + 1. The first population hasthe central tooth wide with sharp cusps equal in length, emanate from posterior margin of tooth base. The lateral teeth have 2 cusps and are long, sharp, pointed and bent towards the rachidian tooth. Whereas the second population, the central tooth is narrow with sharp cusps equal in length, emanate from posterior margin of tooth base. The lateral teeth have 2 cusps and are broad, longer, sharp, pointed and bent towards the rachidian tooth. They are typically sickle shaped with broad strong base. In both populations the rachidian tooth is subquadrate with 3 big cusps in the middle, but in the second population the base of the rachidian is concave while in the first population it is straight. In the present study the median rachidian of the second population, has a broad basal region when compared to first. This similar observation has been made in Chicoreus virgineus ponderosus and Siratus virgineus ponderosus. In the present study, since 2 populations exhibit the same generalized rachiglossate pattern it does not offer much scope for systematic diagnosis below generic level.

Resumo A rádula em todas as espécies de melongeninae é bastante uniforme e caracterizada por dentes laterais bicúspides com cúspides fortemente curvas e raquidianas sub-retangulares, portando geralmente 3 cúspides. O objetivo do presente estudo foi descrever a rádula de 2 populações de Pugilina cochlidium usando SEM. A rádula em 2 espécies mostra-se como um tipo rachiglossate mostrando a fórmula radular de 1 + R + 1. A primeira população tem o dente central largo com cúspides afiadas igual em comprimento, emana da margem posterior da base do dente. Os dentes laterais possuem 2 cúspides longas, pontiagudas, pontiagudas e dobradas em direção ao dente raquidiano. Enquanto a segunda população, o dente central estreito com cúspides afiadas igual em comprimento, emana da margem posterior da base do dente. Os dentes laterais têm 2 cúspides largas, longas, pontiagudas, pontiagudas e dobradas em direção ao dente raquidiano. Eles são tipicamente em forma de foice com ampla base forte. Em ambas as populações, o dente raquidiano é subquadrado com 3 grandes cúspides no meio, mas na segunda população a base do ráquidiano é côncava enquanto na primeira população é reta. No presente estudo, a mediana da raquidiana da segunda população apresenta uma ampla região basal quando comparada à primeira. Esta observação semelhante foi feita em Chicoreus virgineus ponderosus e Siratus virgineus ponderosus. No presente estudo, uma vez que 2 populações exibem o mesmo padrão de rachiglossato generalizado, ele não oferece muito espaço para o diagnóstico sistemático abaixo do nível genérico.

A poluição na Baía de Guanabara e a emergência da pauta ambiental no jornal O Globo / The pollution in Guanabara Bay and the emergence of the environmental agenda in O Globo newspaper / La contaminación en la Bahía de Guanabara y el surgimiento de la agenda ambiental en el periódico O Globo

Este artigo busca apresentar de que formas e sob quais circunstâncias a Baía de Guanabara pôde emergir como importante pauta jornalística ambiental. Analisando matérias do jornal O Globo entre as décadas de 1940 e 1970, período crucial para se entender a poluição daquele ambiente, identificamos a transformação de um referencial idílico da baía para a representação de um lugar de perigo. Nesse sentido, exploramos a importância que a saúde humana adquire para que esta pauta ambiental atingisse um alto patamar de noticialização, semelhantes aos níveis atuais. Refletimos, ainda, sobre as maneiras pelas quais a pauta ambiental pode ser construída, longe de síndromes comuns a esta especialidade jornalística, mas associada a marcos teóricos importantes do campo, como a imprescindibilidade do ativismo ecológico e a necessidade de ampliação do enfoque noticioso e abarcamento de conhecimentos de povos tradicionais.

This article seeks to present in which ways and circumstances Guanabara Bay could emerge as an important environmental journalistic agenda. Analyzing articles from the O Globo newspaper between the 1940s and the 1970s, a crucial period to understand the pollution of the bay, we identified the changes of an idyllic reference point of the bay to represent a place of danger. In this sense, we explore the importance that human health acquires for the environmental agenda of the bay to reach levels of reporting similar to the current ones. We also reflect about how the environmental agenda can be built away from syndromes common to this journalistic field, but associated with important theories in the field, such as the indispensability of ecological activism and the need to expand the news focus and to encompass the knowledge of traditional people.

Este artículo busca presentar de qué maneras y bajo qué circunstancia la Bahía de Guanabara podría emerger como una importante agenda periodística ambiental. Analizando artículos del periódico O Globo entre las décadas de 1940 y 1970, un período crucial para comprender la contaminación de la bahía, identificamos la transformación de un punto de referencia idílico de la bahía para representar un lugar de peligro. Em este sentido, exploramos la importancia que adquiere la salud humana para que la agenda ambiental de la bahía alcance niveles de informes similares a los actuales. También reflejamos las formas em que la agenda ambiental se puede construir a partir de síndromes comunes a este campo periodístico, asociada con importantes teorías en el campo, como la indispensabilidad del activismo ecológico y la necesidad de expandir el enfoque de las noticias y abarcar el conocimiento de las personas tradicionales.

Intra-annual variation in rainfall and its influence of the adults Cyprideis spp (Ostracoda, Crustacea) on a eutrophic estuary (Guanabara Bay, Rio de Janeiro, Brazil) / Variação intra-annual na chuva e a sua influência nos adultos de Cyprideis spp (Ostracoda, Crustacea) em um estuário eutrofizado (Guanabara Bay, Rio de Janeiro, Brasil)

Abstract Spatial and temporal distribution of two species of adult´s ostracods (Cyprideis sp. and Cyprideis salebrosa) were studied as a function of the rainfall patterns in the Guanabara Bay, Rio de Janeiro, Brazil. Samples were taken in ten stations, along six surveys representing three periods (Dry, Early and Late Rainy) for two years. Stations were nested in four areas (Outer, Central, EPA Guapimirim and Impacted). The bottom water (temperature, salinity, dissolved oxygen and oxygen saturation) were measured in each area to characterize the influence of seasonal variations by rainfall. Cyprideis sp. and Cyprideis salebrosa showed patterns distribution to seasonality/surveys (p = 0,002 and p <0,001, respectly). The spatial distribution of Cyprideis sp was significantly different areas studied (p <0.001) indicated well defined areas and distribution in along of the surveys. However, C. salebrosa showed homogeneous distribution in along of the areas within of each survey (p <0.001). Redundancy Analysis (RDA) for the two years evidenced environment preference of the Cyprideis sp. for areas with marine conditions (high influence for channel central) and C. salebrosa for brackish water (high influence of the rivers). This observation reinforces of the existence of areas created by the seasonality of pluviometric regime, a possible dispersion of the adult's ostracods and possibility the use with bioindicators.

Resumo A distribuição espacial e temporal de duas espécies de ostracodes adultos (Cyprideis sp. e Cyprideis salebrosa) foi estudada em função do padrão pluviométrico na Baía de Guanabara, Rio de Janeiro, Brasil. As amostras foram coletadas em dez estações ao longo de seis campanhas, representando três períodos (Seco, Pré e Pós Chuvoso) por dois anos. As estações foram agrupadas em quatro áreas (Externo, Central, EPA Guapimirim e Impactado). A água do fundo (temperatura, salinidade, oxigênio dissolvido e saturação de oxigênio) foi medida em cada área para caracterizar a influência das variações sazonais pela chuva. Cyprideis sp. e Cyprideis salebrosa mostrou distribuição de padrões para sazonalidade/campanhas (p = 0,002 e p <0,001, respctivamente). A distribuição espacial de Cyprideis sp. foi significativamente diferente das áreas estudadas (p <0,001) indicou áreas bem definidas e distribuição ao longo das campanhas. No entanto, C. salebrosa mostrou distribuição homogênea ao longo das áreas dentro de cada campanha (p <0,001). A Análise de Redundância (RDA) para os dois anos evidenciou a preferência ambiental dos Cyprideis sp. para áreas com condições marinhas (alta influência para o canal central) e C. salebrosa para águas salobras (alta influência dos rios). Essa observação reforça a existência de áreas criadas pela sazonalidade do regime pluviométrico, uma possível dispersão dos adultos de ostracodes e a possibilidade do uso como bioindicadores.

Age and growth of two populations of Pugilina cochlidium (Gastropoda: Melongenidae), from Thondi coast-Palk Bay in Tamil Nadu-South East coast of India / Idade e crescimento de duas populações de Pugilina cochlidium (Gastropoda: Melongenidae), de Thondi coast-Palk Bay na costa Tamil Nadu-Sudeste da Índia

Abstract Age and growth of two populations of Pugilina cochlidium were studied. to address the lack of basic information on the growth rates and the size at sexual maturity of organism in a commercially harvested area, which will be important in considering the size limits to conserve this resources in future. In the present study the results showed more or less similar growth patterns in the males and females of two populations of Pugilina cochlidium. The age and growth estimation of these two populations of Pugilina cochlidium were completed using several methods and the outcome of one method will act as a check and control over the other using the FISAT 1 software. The values of asymptotic length (Lα) values obtained in the present study using various methods did not vary greatly. Lα values obtained for the first population of Pugilina cochlidium was 95.55 mm for males and 106.05 mm for females and the growth rate (K) for males (0.588 yr-1) and females (0.620 yr-1) was given by k-scan routine in ELEFAN. Similarly, the values of asymptotic length (Lα), obtained for second population of Pugilina cochlidium, was 96.15 mm for males and 106.05 mm for females and the growth rate (K) for males (0.540 yr-1) and females (0.950 yr-1) was given by k-scan routine in ELEFAN.

Resumo A idade e o crescimento de duas populações de Pugilina cochlidium foram estudados. abordar a falta de informações básicas sobre as taxas de crescimento e o tamanho na maturidade sexual do organismo em uma área comercialmente colhida, o que será importante considerando os limites de tamanho para conservar esses recursos no futuro. No presente estudo os resultados mostraram padrões de crescimento mais ou menos semelhantes nos machos e fêmeas de duas populações de Pugilina cochlidium. A idade e a estimativa de crescimento destas duas populações de Pugilina cochlidium foram completadas usando vários métodos e o resultado de um método funcionará como uma verificação e controle sobre o outro usando o software FISAT 1. Os valores de comprimento assintótico (Lα) obtidos no presente estudo usando vários métodos não variaram muito. Os valores de Lα obtidos para a primeira população de Pugilina cochlidium foram de 95,55 mm para machos e 106,05 mm para fêmeas e a taxa de crescimento (K) para machos (0,588 yr-1) e fêmeas (0,620 yr-1) foi dada pela rotina k-scan na ELEFAN. Similarmente, os valores de comprimento assintótico (Lα), obtidos para a segunda população de Pugilina cochlidium, foram 96,15 mm para machos e 106,05 mm para fêmeas e a taxa de crescimento (K) para machos (0,540 anos) e fêmeas (0,950 anos). 1) foi dado pela rotina de k-scan na ELEFAN.

Prediction of Chronic Disease-Related Inpatient Prolonged Length of Stay Using Machine Learning Algorithms / 대한의료정보학회지

Effect of drying methods on the powder and compaction properties of microcrystalline cellulose derived from Gossypium herbaceum

The effect of drying method, a process variable, on the powder and compaction properties of microcrystalline cellulose (MCC) obtained from the partial acid hydrolysis of bleached alpha (α) cellulose content of matured linters of Gossypium herbaceum (GH) was investigated. A portion of the wet MCC obtained was fluid bed dried at 60 ± 1 ºC, inlet air of 30 m3 min-1 for 3 h (coded MCC-GossF). The second portion was lyophilized at - 45 ± 2 ºC for 6 h (coded MCC-GossL). The physicochemical, scanning electron micrographs, X ray diffraction patterns and micromeritic properties of the derived MCCs were determined using standard methods. The cohesiveness and compactibility of the powders were investigated using Kawakita model while the deformation and compressibility pattern were determined using Heckel model. Avicel® PH 102 (AV-102) was used as comparing standard. Ash values of < 2%, pH (6.54 ± 0.23 to 6.58 ± 0.08), degree of polymerization, DP (231.50) was obtained. MCC-GossF had higher moisture content, swellability, better flow indices, and lesser porosity than MCC-GossL. Kawakita model demonstrated good consolidation and compactibility for both powders. Compacts of MCC-GossL were significantly (p < 0.05) harder than those of MCC-GossF. Heckel analysis demonstrated good compressibility and deformation pattern that was comparable with AV-102. Compacts of MCC-GossL had better mechanical and tablet compression properties than MCC-GossF

Detection of multidrug-resistant Enterobacteriaceae isolated from river waters flowing to the Guanabara Bay and from clinical samples of hospitals in Rio de Janeiro, Brazil / Detección de enterobacterias multirresistentes aisladas en aguas de los ríos que desembocan en la bahía de Guanabara y en muestras de hospitales de Río de Janeiro, Brasil

Abstract Introduction: The use of antibiotics in humans, animal husbandry and veterinary activities induces selective pressure leading to the colonization and infection by resistant strains. Objective: We evaluated water samples collected from rivers of the Guanabara Bay, which have suffered minor and major environmental degradation, and clinical samples of hospital origin to detect evidence of the presence of resistance genes to aminoglycosides, beta-lactam antibiotics and fluoroquinolones in strains of Klebsiella pneumoniae subsp. pneumoniae, K. pneumoniae subsp. ozaenae and Escherichia coli. Materials and methods: For isolation of the water strains we employed culture media containing 32 μg/ml cephalotin and 8 μg/ml gentamicin. The strains from clinical materials were selected using culture media containing 8 μg/ml gentamicin. The strains were identified and subjected to antimicrobial susceptibility testing (AST), plasmid DNA extraction and polymerase chain reaction (PCR) to detect genes encoding enzymes modifying aminoglycosides (EMA), extended-spectrum beta-lactamases (ESBL) and plasmid mechanisms of quinolone resistance (PMQR). Results: The AST of the isolates recovered from water samples showed multidrug-resistance profiles similar to those found in isolates recovered from clinical materials. All isolates from water samples and 90% of the isolates from clinical samples showed at least one plasmid band. In the PCR assays, 7.4% of the isolates recovered from water samples and 20% of those from clinical materials showed amplification products for the three antimicrobial classes. Conclusion: We believe that the detection of microorganisms presenting genetic elements in environments such as water is necessary for the prevention and control of their dissemination with potential to infect humans and other animals in eventual contact with these environments.

Resumen Introducción. El uso de antibióticos en seres humanos, en la industria pecuaria y en las actividades veterinarias induce una presión selectiva que resulta en la colonización e infección con cepas resistentes. Objetivo. Determinar la presencia de genes de resistencia a aminoglucósidos, betalactámicos y fluoroquinolonas en cepas de Klebsiella pneumoniae subsp. pneumoniae, K. pneumoniae subsp. ozaenae y Escherichia coli, obtenidas de muestras de agua de los ríos que desembocan en la bahía de Guanabara y de muestras clínicas de hospitales de Río de Janeiro. Materiales y métodos. En la selección de las cepas resistentes obtenidas de las muestras de agua de los ríos, se emplearon medios de cultivo que contenían 32 μg/ml de cefalotina y 8 μg/ ml de gentamicina. En el caso de las muestras de especímenes clínicos, se usaron medios de cultivo que contenían 8 μg/ml de gentamicina. Las cepas se identificaron y se sometieron a pruebas de sensibilidad antimicrobiana, extracción de ADN plasmídico y pruebas de reacción en cadena de la polimerasa (PCR) para detectar los genes que codifican aquellas enzimas que modifican los aminoglucósidos, las betalactamasas de espectro extendido (BLEE) y los mecanismos de resistencia a las quinolonas mediados por plásmidos. Resultados. Se encontraron perfiles de resistencia a los antimicrobianos similares en los dos grupos. En todas las bacterias obtenidas de las muestras de agua y en 90 % de las muestras clínicas, se evidenciaron bandas de plásmidos asociados con la transferencia de genes de resistencia. En las pruebas de PCR, se obtuvieron productos de amplificación de los genes de resistencia para las tres clases de antimicrobianos analizados, en el 7,4 % de las bacterias recuperadas de las muestras de agua y en el 20 % de aquellas recuperadas de las muestras clínicas. Conclusión. La detección de microorganismos con elementos genéticos que confieren resistencia a los antibióticos en ambientes como el agua, es una estrategia necesaria para prevenir y controlar la diseminación de estos agentes patógenos con potencial para infectar a humanos y a otros animales en dichos ambientes.

Treatment of Facial Neuralgia Developed after Inferior Meatal Antrostomy by Narrowing of the Inlet with Endoscopic Cartilage Graft

Inferior meatal antrostomy (IMA) is a widely performed surgical technique to treat postoperative maxillary mucocele. The method is safe and easy to perform, without major complications compared with other approaches. Facial pain after IMA is a rare clinical entity that can be challenging to diagnose and treat. The authors present an unusual case of acute facial neuralgia triggered by cold air that developed after IMA. The antrostomy was located at the anterior-most part of the inferior meatus, and the inlet size was relatively large compared with the size of the remaining sinus. Surgical narrowing of the antrostomy inlet using endoscopy dramatically reduced the symptoms, and symptom relief was maintained for up to one year after surgery.

Vitamin D maintains E-cadherin intercellular junctions by downregulating MMP-9 production in human gingival keratinocytes treated by TNF-α

PURPOSE: Despite the well-known anti-inflammatory effects of vitamin D in periodontal health, its mechanism has not been fully elucidated. In the present study, the effect of vitamin D on strengthening E-cadherin junctions (ECJs) was explored in human gingival keratinocytes (HGKs). ECJs are the major type of intercellular junction within the junctional epithelium, where loose intercellular junctions develop and microbial invasion primarily occurs. METHODS: HOK-16B cells, an immortalized normal human gingival cell line, were used for the study. To mimic the inflammatory environment, cells were treated with tumor necrosis factor-alpha (TNF-α). Matrix metalloproteinases (MMPs) in the culture medium were assessed by an MMP antibody microarray and gelatin zymography. The expression of various molecules was investigated using western blotting. The extent of ECJ development was evaluated by comparing the average relative extent of the ECJs around the periphery of each cell after immunocytochemical E-cadherin staining. Vitamin D receptor (VDR) expression was examined via immunohistochemical analysis. RESULTS: TNF-α downregulated the development of the ECJs of the HGKs. Dissociation of the ECJs by TNF-α was accompanied by the upregulation of MMP-9 production and suppressed by a specific MMP-9 inhibitor, Bay 11-7082. Exogenous MMP-9 decreased the development of ECJs. Vitamin D reduced the production of MMP-9 and attenuated the breakdown of ECJs in the HGKs treated with TNF-α. In addition, vitamin D downregulated TNF-α-induced nuclear factor kappa B (NF-κB) signaling in the HGKs. VDR was expressed in the gingival epithelium, including the junctional epithelium. CONCLUSIONS: These results suggest that vitamin D may avert TNF-α-induced downregulation of the development of ECJs in HGKs by decreasing the production of MMP-9, which was upregulated by TNF-α. Vitamin D may reinforce ECJs by downregulating NF-κB signaling, which is upregulated by TNF-α. Strengthening the epithelial barrier may be a way for vitamin D to protect the periodontium from bacterial invasion.

Review of Machine Learning Algorithms for Diagnosing Mental Illness

OBJECTIVE: Enhanced technology in computer and internet has driven scale and quality of data to be improved in various areas including healthcare sectors. Machine Learning (ML) has played a pivotal role in efficiently analyzing those big data, but a general misunderstanding of ML algorithms still exists in applying them (e.g., ML techniques can settle a problem of small sample size, or deep learning is the ML algorithm). This paper reviewed the research of diagnosing mental illness using ML algorithm and suggests how ML techniques can be employed and worked in practice. METHODS: Researches about mental illness diagnostic using ML techniques were carefully reviewed. Five traditional ML algorithms-Support Vector Machines (SVM), Gradient Boosting Machine (GBM), Random Forest, Naïve Bayes, and K-Nearest Neighborhood (KNN)-frequently used for mental health area researches were systematically organized and summarized. RESULTS: Based on literature review, it turned out that Support Vector Machines (SVM), Gradient Boosting Machine (GBM), Random Forest, Naïve Bayes, and K-Nearest Neighborhood (KNN) were frequently employed in mental health area, but many researchers did not clarify the reason for using their ML algorithm though every ML algorithm has its own advantages. In addition, there were several studies to apply ML algorithms without fully understanding the data characteristics. CONCLUSION: Researchers using ML algorithms should be aware of the properties of their ML algorithms and the limitation of the results they obtained under restricted data conditions. This paper provides useful information of the properties and limitation of each ML algorithm in the practice of mental health.

Fish assemblages in three fringed mangrove bays of Santa Cruz Island, Galapagos Marine Reserve / Ensamblaje de peces en tres bahías con bordes de manglar en la Isla Santa Cruz, Reserva Marina de Galápagos

Abstract Mangrove-fringed bays are highly variable ecosystems that provide critical habitats for fish species. In this study we assessed the fish assemblage in three mangrove-fringed bays (Punta Rocafuerte, Saca Calzón and Garrapatero) in the Southeast side of Santa Cruz Island, Galapagos Marine Reserve. Using gillnets, we carried out a total of 108 fieldtrips from January 2010 to December 2011. A total of 1 773 bony and 740 cartilaginous fishes belonging to 26 species and 15 families were identified at the same sampling sites. Species richness was higher in the protected bay (Garrapatero) than in those open to fishing (Punta Rocafuerte, Saca Calzón). Blacktip sharks (Carcharhinus limbatus, n= 729), Thoburn's mullets (Mugil thoburni, n= 492), Peruvian mojarras (Diapterus peruvianus, n= 440), milkfish (Chanos chanos, n= 206) and the yellow fin mojarras (Gerres cinereus, n= 197) were the most common species across sites and season (cold and warm). The abundance of the most common species varied seasonally, with C. limbatus and C. chanos being more abundant in the warm season (December to April), and M. thoburni, C. limbatus and G. cinereus in the cold season (June to October). Temperature was the most important driver of abundance in C. limbatus and C. chanos, while salinity influenced Umbrina galapagorum. This study represents the first evaluation of the fish assemblage composition and dynamics in mangrove-fringed bays in the Galapagos Marine Reserve. Rev. Biol. Trop. 66(2): 674-687. Epub 2018 June 01.

Resumen Las bahías de manglar son ecosistemas muy variables que proveen hábitats críticos para especies de peces. En este estudio se evaluó los ensamblajes de peces de tres bahías de manglar (Punta Rocafuerte, Saca Calzón y Garrapatero) ubicadas en el sureste de la isla Santa Cruz, Reserva Marina de Galápagos. Usando redes de trasmallos iguales a los usados por la pesca artesanal, se llevaron a cabo un total de 108 salidas de campo entre enero 2010 y diciembre 2011. Un total 1 773 peces óseos y 740 peces cartilaginosos correspondiendo a 26 especies y 15 familias fueron capturados, identificados y liberados con vida. La riqueza de especies fue mayor en Garrapatero (sitio protegido) que en Punta Rocafuerte y Saca Cazón (sitios abiertos a la pesca). Las mayores capturas estuvieron representadas por el tiburón punta negra (Carcharhinus limbatus; n= 729), seguido la lisa rabo negro (Mugil thoburni; n= 492), la mojarra peruana (Diapterus peruvianus; n= 440), la diabla (Chanos chanos; n= 206) y la mojarra rayada (Gerres cinereus; n= 197). A pesar que éstas especies fueron consistentemente las más importantes a través de los sitios y temporadas (caliente y fría), se observó una mayor abundancia de C. limbatus y C. chanos durante la temporada caliente (enero a abril), y de M. thoburni, C. limbatus y G. cinereus durante la temporada fría (junio a octubre). La temperatura fue determinada como el factor más importante que influye en la abundancia de C. limbatus y C. Chanos, mientras la salinidad lo fue para Umbrina galapagorum. Este estudio representa una importante contribución para el entendimiento de la composición de los ensamblajes de peces en las bahías de manglar de la Reserva Marina de Galápagos.

Reproductive cycle of Mytella guyanensis (Lamarck, 1819) in a Marine Reserve (RESEX Bay of Iguape), Bahia, Brazil / Ciclo reprodutivo de Mytella guyanensis (Lamarck, 1819) na Reserva Extrativista Marinha Baía do Iguape, Bahia, Brasil

Abstract Mytella guyanensis, consumed and commercialized in coastal regions of Brazil, is one of several bivalve species of socioeconomic interest for coastal communities. Besides serving as a source of income and subsistence for these communities, it also contributes to their food security as it is a source of proteins and micronutrients. Thus, the reproductive cycle of this species was studied aiming to contribute to food security and its preservation. Samples were collected monthly, between March 2014 and March 2015, in a natural stock (12°38'50"S; 38°51'43"W) in a Marine Reserve (RESEX Bay of Iguape) (community Engenho da Ponte), Bahia, Brazil. Mytella guyanensis is collected by women on site, where the artisanal fishing of this resource is performed without following any specific handling procedure. Also, empirical evidence indicates overexploitation. The specimens collected were measured along the anterior-posterior axis (length), and after macroscopic analysis they were fixed in Davidson solution, processed by routine histology techniques and stained with Harris haematoxylin and eosin (H&E). The macroscopic analysis showed sexual dimorphism, with the male and female gonads presenting a milky-white and orange colour, respectively. A 1:1 sex ratio (M: F) was observed and reproduction of the species was continuous all year round. March, April, July and August were the months with highest values of gamete elimination. We suggest that a M. guyanensis management plan should restrict capture during these months, in order to sustainably regulate exploitation of this food resource in this reserve.

Resumo Mytella guyanensis, consumida e comercializada em regiões litorâneas do Brasil, é uma das diversas espécies de bivalves de interesse socioeconômico para comunidades litorâneas. Além de servir como fonte de renda e subsistência para essas comunidades, esta contribui para a sua segurança alimentar, por ser fonte de proteínas e micronutrientes. Assim, o ciclo reprodutivo desta espécie foi estudado visando contribuir com a segurança alimentar e a preservação da mesma. As amostragens foram realizadas mensalmente, entre março de 2014 e março de 2015 em um estoque natural (12°38'50"S e 38°51'43"W) na Reserva Extrativista Marinha Baía do Iguape (comunidade Engenho da Ponte), Bahia. Mytella guyanensis é coletada no local por mulheres, onde a pesca artesanal desse recurso é realizada sem seguir nenhum procedimento específico de manejo e evidência empírica indica sobrexplotação. Os espécimes coletados foram medidos ao longo do eixo ântero-posterior (comprimento) e após a análise macroscópica, foram fixados em solução de Davidson, processados por técnicas rotineiras de histologia e coradas em hematoxilina de Harris e eosina (HE). A análise macroscópica evidenciou dimorfismo sexual, com as gônadas de machos e fêmeas apresentando coloração branco leitosa e alaranjada, respectivamente. Uma proporção sexual (M: F) de 1:1 foi observada e a reprodução foi contínua ao longo do ano. Março, abril, julho e agosto apresentaram os maiores valores de eliminação de gametas. Sugerimos que um plano de manejo de M. guyanensis restrinja a captura deste durante esses meses, a fim de regular de forma sustentável a exploração desse recurso nesta reserva.

Metabolic Syndrome Prediction Using Machine Learning Models with Genetic and Clinical Information from a Nonobese Healthy Population

The prevalence of metabolic syndrome (MS) in the nonobese population is not low. However, the identification and risk mitigation of MS are not easy in this population. We aimed to develop an MS prediction model using genetic and clinical factors of nonobese Koreans through machine learning methods. A prediction model for MS was designed for a nonobese population using clinical and genetic polymorphism information with five machine learning algorithms, including naïve Bayes classification (NB). The analysis was performed in two stages (training and test sets). Model A was designed with only clinical information (age, sex, body mass index, smoking status, alcohol consumption status, and exercise status), and for model B, genetic information (for 10 polymorphisms) was added to model A. Of the 7,502 nonobese participants, 647 (8.6%) had MS. In the test set analysis, for the maximum sensitivity criterion, NB showed the highest sensitivity: 0.38 for model A and 0.42 for model B. The specificity of NB was 0.79 for model A and 0.80 for model B. In a comparison of the performances of models A and B by NB, model B (area under the receiver operating characteristic curve [AUC] = 0.69, clinical and genetic information input) showed better performance than model A (AUC = 0.65, clinical information only input). We designed a prediction model for MS in a nonobese population using clinical and genetic information. With this model, we might convince nonobese MS individuals to undergo health checks and adopt behaviors associated with a preventive lifestyle.

Performance of machine learning methods in diagnosing Parkinson's disease based on dysphonia measures

Parkinson's disease (PD) is a widespread degenerative syndrome that affects the nervous system. Its early appearing symptoms include tremor, rigidity, and vocal impairment (dysphonia). Consequently, speech indicators are important in the identification of PD based on dysphonic signs. In this regard, computer-aided-diagnosis systems based on machine learning can be useful in assisting clinicians in identifying PD patients. In this work, we evaluate the performance of machine learning based techniques for PD diagnosis based on dysphonia symptoms. Several machine learning techniques were considered and trained with a set of twenty-two voice disorder measurements to classify healthy and PD patients. These machine learning methods included linear discriminant analysis (LDA), k nearest-neighbors (k-NN), naïve Bayes (NB), regression trees (RT), radial basis function neural networks (RBFNN), support vector machine (SVM), and Mahalanobis distance classifier. We evaluated the performance of these methods by means of a tenfold cross validation protocol. Experimental results show that the SVM classifier achieved higher average performance than all other classifiers in terms of overall accuracy, G-mean, and area under the curve of the receiver operating characteristic plot. The SVM classifier achieved higher performance measures than the majority of the other classifiers also in terms of sensitivity, specificity, and F-measure statistics. The LDA, k-NN and RT achieved the highest average precision. The RBFNN method yielded the highest F-measure.; however, it performed poorly in terms of other performance metrics. Finally, t tests were performed to evaluate statistical significance of the results, confirming that the SVM outperformed most of the other classifiers on the majority of performance measures. SVM is a promising method for identifying PD patients based on classification of dysphonia measurements.

Alar Rim Composite Graft: A Safe and Simple Way to Correct Alar Retraction

BACKGROUND: The alar rim is a complex structure that ensures the competence of the external valves and the patency of inlets to the nasal airways. Retraction of the alar rim is caused by congenital malpositioning, hypoplasia, or surgical weakening of the lateral crura, with the potential for both functional and aesthetic ramifications. Most previously introduced procedures involved a relatively long operation time and relatively high risks of surgical complications. The purpose of this study is to introduce a novel surgical technique for alar rim connection and to present its results. METHODS: After marking the extent of the correction, the recipient alar bed was created by making an incision through the vestibular skin 2-mm cephalad to the rim. Then, the composite graft was harvested from the cymba concha by removing the cartilage with its adherent anterior skin. According to the degree of retraction, the harvested composite graft was divided into 2 pieces considering the symmetry of both alar rims. The composite grafts were inserted into the defects and primary closure was done at the donor site. RESULTS: Our surgical technique was used to correct 12 retracted alar rims in 6 patients. Caudal advancement of the alar rims was observed and the contour of the ala was corrected in all 6 patients. The mean length of follow-up was 1-year, and there were no postoperative complications, such as graft loss or disruption. CONCLUSIONS: The alar rim composite graft is a safe and simple technique for correction of short nostril and caudal transposition of the retracted alar rim.